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          • 2011-12-11
        • Optical power tests
        • Optical Stimulator 2.0
        • Projector Set-up for Intrinsic Imaging System
        • Rig1. Diagram
      • Rig 2. 2-photon rig
        • 2-photon imaging: workflow
        • 2-photon quick setup / shutdown list
        • 2-photon standard operating procedure (SOP)
          • SOP to add
        • brainstorms
        • Devices
        • Filter cubes
        • Laser calibration procedure
        • Laser calibration table
        • Repair notes
        • Troubleshooting the 2p rig
      • Rig 3. Slice / uncaging rig
        • Prototyping equipment
        • Rig 3 Laser Alignment (Class 4 UV Laser) Standard Operating Procedure (SOP)
      • Rig 4 Multichannel electrophysiology / visual stimulation
        • Construction
        • Using Plexon
      • Rig 5.
        • IMAQ camera issues
      • S10/BNC rigs
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      • Hood
      • Microtome
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      • Fraden lab 2-photon FLIM system
      • Microtome
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    • SEE "ANIMALS" FOR IN VIVO PROCEDURES
    • AAV/Lentivirus
    • Cutting an optical fiber: How to achieve a good cut
    • Dark Rearing Schematics
    • Ferret brain blocking
    • Ferret perfusion solutions
    • Golgi-Cox Staining
    • How to mount an LED
    • Oregon Green BAPTA-1 AM Storage
    • PI joining experiment
    • Swadlow lab notes
    • Standard Operating Procedures (SOPs)
      • Ultraviolet light sterilization
  • Resources
    • A Repository of Useful Information
    • A list of actions for equality
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      • Gardner lab style carbon fiber bundles
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      • Old
        • Dan Notes
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        • 2-photon excitation wavelengths
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      • Amblyopia / Myopia
      • Auditory
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      • Calcium imaging
      • Cerebral Visual Impairment
      • Cortex
      • CSD
      • Development of orientation selectivity and ocular dominance
      • Direction selectivity -- experimental papers
      • Electrodes
      • Ferret cortex before eye opening
      • LGN -- lateral geniculate nucleus
      • Microscopy
      • Modeling
      • Modeling -- development of direction selectivity
      • Models of direction selectivity
      • New lab members
      • New undergrads
      • Optics
      • Premature experience
      • Reverse correlation
      • Reviews
      • Quotes
      • Searching for journal articles
      • Spatial frequency tuning
      • Stats
      • STDP
      • Supralinear Stabilized Networks
      • Surround modulation
      • Teaching
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        • From the group leader
      • Virus
      • Vision Tech
      • Visual cortex
    • Rotation reports
      • Rotation Reports
      • 2010-2011 1
        • Heather Panic -- Slice scope 1
        • Tony Ng - High speed scanning 2-photon
      • 2010-2011 2
        • Krista Disano
        • Neil Ritter
      • 2011-2012
        • Aaron Bergman
        • Brittney Gardner
        • Nate Miska
        • Pranay Bharadwaj
        • Stephen Alkins
      • 2012-2013
        • Alice Gelman (fall semester)
        • Anna Chavez
        • Meredith Blankenship
        • Narendra Mukherjee
      • 2013-2014
        • Joe Wachutka
        • Mark Zielinski
        • Sarah Richards
        • Shen Wang
        • Wesley Alford
      • 2014-2015
        • Alejandro Torrado Pacheco
        • Chelsea Groves Khunle
        • Claire Symanski
        • David Hampton
        • Linnea Herzog
      • 2015-2016
        • Andrea Stacy
        • Derek Wise
        • Libby Lueck
        • Mihwa Kang
        • Roshan Nanu
        • Wenbo Tang
      • 2016-2017
        • Hillary Rodgers
      • Susannah Sleppian
    • Safety
      • 1. Animal Care
      • Chemical Safety
        • Urethane SOP
      • Compressed Gases
      • Laser Safety
      • MSDS/chemical inventory
      • Throwing things away
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    • Theses
    • Useful images
    • Website reorg ideas
    • Where is it? (Locator)
    • Writing
    • Out-of-date stuff
      • A COVID-19 link list
      • Projects
        • K-L with Fiser lab
          • Analysis
          • analyzing Intan KL data
          • direction selectivity in Marjena's experiments
          • importing spikes from Plexon/LabView
          • K-L w/ Fiser lab
          • Logs
          • Ralf's advice on computing KLs
        • Virus
          • Injection ideas
          • Received viruses, DNA
        • Calcium imaging
          • Using vhtools for calcium imaging of third party images
        • Carbon Fiber
          • Jig Provenance
          • Reading
        • Dark-rearing, Normalization, and Surround Suppression
          • manuscript notes
        • Histology
          • April 2011
          • April 2012
          • August 2011
          • December 2011
          • Diagram: Ferret Brain Anatomy, Slice Anatomy
          • February 2012
          • Inhibitory Interneuron + NeuN Immunohistochemistry
          • Inhibitory Interneuron Cocktail
          • January 2012
          • July 2011
          • June 2011
          • March 2012
          • March2011
          • May 2011
          • September 2011
          • Virus Injected
          • Virus Injected - DsRed2
        • ProjectorScope
        • Reverse Correlation
        • Rem2 mouse imaging
        • Mouse Spines
          • Measuring spine density
        • LGN to Ctx anatomy
        • LGN development
        • LeafLabs
        • Intracellular in vivo Sharp Recording
          • Experiment Prep
        • ChR2
          • ChR2 Histology
          • steve analysis log
      • Tasks
        • Array Tomography
          • directory format
        • Ferret LGN
        • In vivo labeling
        • Mike Long Peltier
        • Scambled stimuli project
          • Feed-forward model
        • Steve
VH Lab internal site
  • Home
  • Policies
  • Animals: IACUC & IBC
    • About
    • Protocols
    • Log forms
    • Charts and tables
    • Inspections
    • Marshall Farms ferret care correspondence
    • Controlled Substance FAQ
    • New people: Training for animal work (IACUC and IBC)
    • Non-survival surgeries
    • Water Deprivation
    • Zoey's Virus notes
    • Expired
      • Forms
      • Protocols
      • Controlled substances procedures
  • Devices
    • Borrowed
    • BNC_microscopes
    • Capnograph
    • Computers
      • FAQ
      • Future Name Ideas
      • Hardware
      • Installing new
        • Mac for office use
        • PC for office use
      • Server notes
      • Software
        • Data analysis/modeling for projects
        • Transferring experimental data
        • Updating software on Foghorn or Leghorn
    • Contact lenses
    • Dental drills
    • Electrodes
    • EXFO Xcite 120Q light source
    • Inscopix nVista
    • Kopf 700C electrode puller
    • Leica Microtome
    • Mai Tai laser
    • MANUALS
    • MeasurementComputing USB1208FS
    • NEC NP510 Projector
    • Perfusion Sink
    • Pipettes
    • Rigs
      • Rig 1. Imaging/Electrophys rig
        • Documents
        • Logs
          • 2011-12-11
        • Optical power tests
        • Optical Stimulator 2.0
        • Projector Set-up for Intrinsic Imaging System
        • Rig1. Diagram
      • Rig 2. 2-photon rig
        • 2-photon imaging: workflow
        • 2-photon quick setup / shutdown list
        • 2-photon standard operating procedure (SOP)
          • SOP to add
        • brainstorms
        • Devices
        • Filter cubes
        • Laser calibration procedure
        • Laser calibration table
        • Repair notes
        • Troubleshooting the 2p rig
      • Rig 3. Slice / uncaging rig
        • Prototyping equipment
        • Rig 3 Laser Alignment (Class 4 UV Laser) Standard Operating Procedure (SOP)
      • Rig 4 Multichannel electrophysiology / visual stimulation
        • Construction
        • Using Plexon
      • Rig 5.
        • IMAQ camera issues
      • S10/BNC rigs
    • Shared Facilities
      • Admin
      • Hood
      • Microtome
      • Perfusion Sink
      • Fraden lab 2-photon FLIM system
      • Microtome
      • Marianas Spinning Disk
    • Stereotaxic frames (for medium animals)
  • Orders
    • Place Order
    • View past orders
    • Ferrets
    • Reimbursement
    • Common items
    • Exceptions to normal orders
    • FedEx
    • Expensive stuff
    • Management
      • P-cards
      • Companies
      • Logins, etc. for Companies and Computers
  • Procedures & recipes
    • SEE "ANIMALS" FOR IN VIVO PROCEDURES
    • AAV/Lentivirus
    • Cutting an optical fiber: How to achieve a good cut
    • Dark Rearing Schematics
    • Ferret brain blocking
    • Ferret perfusion solutions
    • Golgi-Cox Staining
    • How to mount an LED
    • Oregon Green BAPTA-1 AM Storage
    • PI joining experiment
    • Swadlow lab notes
    • Standard Operating Procedures (SOPs)
      • Ultraviolet light sterilization
  • Resources
    • A Repository of Useful Information
    • A list of actions for equality
    • Data Management Plan
    • Electrodes
      • Gardner lab style carbon fiber bundles
    • Electronics
    • Geography
    • Grants
      • Applications
      • Grant Info
      • grant policies
      • Notes
      • Undergrad Grants
      • University Undergraduate prizes
    • Lab Jobs
      • Lab Job Matrix
      • Drug Czar Responsibilities
      • Fume Hood Czar
      • Gas Tank Stocking & Ordering Responsibilities
      • Histology Czar Responsibilities
      • Perfusion Sink Czar
      • Safety Officer, Expiration Checker, Facilities Walkthrough Job Description
      • Old
        • Dan Notes
    • Lab meetings
      • What to do when you're the presenter
      • Business
      • Lab meeting history
      • Vision Journal Club
    • Lab Notebooks
      • Electronic notebooks
        • Steve V's notebooks
      • Instructions
    • Lab visits
      • Swadlow lab visit
    • Making Good Presentations
    • Office stuff
      • A New Person Checklist
      • Contact info
      • Editing the web page
      • Grants
      • Mailing lists
      • Management
      • Office FAQ
      • People
        • Academic Year Undergrads
        • Rotations
        • Summer undergrads
    • Optics/Imaging
      • 2-photon microscopy
        • 2-photon excitation wavelengths
      • Lab Optics Inventory
      • Optics/Imaging at Brandeis
      • ThorLabs
    • Posters
      • Making a poster
    • Reading
      • Adult plasticity
      • Amblyopia / Myopia
      • Auditory
      • Big data
      • Books
      • Books wish list
      • Calcium imaging
      • Cerebral Visual Impairment
      • Cortex
      • CSD
      • Development of orientation selectivity and ocular dominance
      • Direction selectivity -- experimental papers
      • Electrodes
      • Ferret cortex before eye opening
      • LGN -- lateral geniculate nucleus
      • Microscopy
      • Modeling
      • Modeling -- development of direction selectivity
      • Models of direction selectivity
      • New lab members
      • New undergrads
      • Optics
      • Premature experience
      • Reverse correlation
      • Reviews
      • Quotes
      • Searching for journal articles
      • Spatial frequency tuning
      • Stats
      • STDP
      • Supralinear Stabilized Networks
      • Surround modulation
      • Teaching
      • Thalamocortical
      • Thoughts
        • From the group leader
      • Virus
      • Vision Tech
      • Visual cortex
    • Rotation reports
      • Rotation Reports
      • 2010-2011 1
        • Heather Panic -- Slice scope 1
        • Tony Ng - High speed scanning 2-photon
      • 2010-2011 2
        • Krista Disano
        • Neil Ritter
      • 2011-2012
        • Aaron Bergman
        • Brittney Gardner
        • Nate Miska
        • Pranay Bharadwaj
        • Stephen Alkins
      • 2012-2013
        • Alice Gelman (fall semester)
        • Anna Chavez
        • Meredith Blankenship
        • Narendra Mukherjee
      • 2013-2014
        • Joe Wachutka
        • Mark Zielinski
        • Sarah Richards
        • Shen Wang
        • Wesley Alford
      • 2014-2015
        • Alejandro Torrado Pacheco
        • Chelsea Groves Khunle
        • Claire Symanski
        • David Hampton
        • Linnea Herzog
      • 2015-2016
        • Andrea Stacy
        • Derek Wise
        • Libby Lueck
        • Mihwa Kang
        • Roshan Nanu
        • Wenbo Tang
      • 2016-2017
        • Hillary Rodgers
      • Susannah Sleppian
    • Safety
      • 1. Animal Care
      • Chemical Safety
        • Urethane SOP
      • Compressed Gases
      • Laser Safety
      • MSDS/chemical inventory
      • Throwing things away
      • Viruses
    • Theses
    • Useful images
    • Website reorg ideas
    • Where is it? (Locator)
    • Writing
    • Out-of-date stuff
      • A COVID-19 link list
      • Projects
        • K-L with Fiser lab
          • Analysis
          • analyzing Intan KL data
          • direction selectivity in Marjena's experiments
          • importing spikes from Plexon/LabView
          • K-L w/ Fiser lab
          • Logs
          • Ralf's advice on computing KLs
        • Virus
          • Injection ideas
          • Received viruses, DNA
        • Calcium imaging
          • Using vhtools for calcium imaging of third party images
        • Carbon Fiber
          • Jig Provenance
          • Reading
        • Dark-rearing, Normalization, and Surround Suppression
          • manuscript notes
        • Histology
          • April 2011
          • April 2012
          • August 2011
          • December 2011
          • Diagram: Ferret Brain Anatomy, Slice Anatomy
          • February 2012
          • Inhibitory Interneuron + NeuN Immunohistochemistry
          • Inhibitory Interneuron Cocktail
          • January 2012
          • July 2011
          • June 2011
          • March 2012
          • March2011
          • May 2011
          • September 2011
          • Virus Injected
          • Virus Injected - DsRed2
        • ProjectorScope
        • Reverse Correlation
        • Rem2 mouse imaging
        • Mouse Spines
          • Measuring spine density
        • LGN to Ctx anatomy
        • LGN development
        • LeafLabs
        • Intracellular in vivo Sharp Recording
          • Experiment Prep
        • ChR2
          • ChR2 Histology
          • steve analysis log
      • Tasks
        • Array Tomography
          • directory format
        • Ferret LGN
        • In vivo labeling
        • Mike Long Peltier
        • Scambled stimuli project
          • Feed-forward model
        • Steve
  • More
    • Home
    • Policies
    • Animals: IACUC & IBC
      • About
      • Protocols
      • Log forms
      • Charts and tables
      • Inspections
      • Marshall Farms ferret care correspondence
      • Controlled Substance FAQ
      • New people: Training for animal work (IACUC and IBC)
      • Non-survival surgeries
      • Water Deprivation
      • Zoey's Virus notes
      • Expired
        • Forms
        • Protocols
        • Controlled substances procedures
    • Devices
      • Borrowed
      • BNC_microscopes
      • Capnograph
      • Computers
        • FAQ
        • Future Name Ideas
        • Hardware
        • Installing new
          • Mac for office use
          • PC for office use
        • Server notes
        • Software
          • Data analysis/modeling for projects
          • Transferring experimental data
          • Updating software on Foghorn or Leghorn
      • Contact lenses
      • Dental drills
      • Electrodes
      • EXFO Xcite 120Q light source
      • Inscopix nVista
      • Kopf 700C electrode puller
      • Leica Microtome
      • Mai Tai laser
      • MANUALS
      • MeasurementComputing USB1208FS
      • NEC NP510 Projector
      • Perfusion Sink
      • Pipettes
      • Rigs
        • Rig 1. Imaging/Electrophys rig
          • Documents
          • Logs
            • 2011-12-11
          • Optical power tests
          • Optical Stimulator 2.0
          • Projector Set-up for Intrinsic Imaging System
          • Rig1. Diagram
        • Rig 2. 2-photon rig
          • 2-photon imaging: workflow
          • 2-photon quick setup / shutdown list
          • 2-photon standard operating procedure (SOP)
            • SOP to add
          • brainstorms
          • Devices
          • Filter cubes
          • Laser calibration procedure
          • Laser calibration table
          • Repair notes
          • Troubleshooting the 2p rig
        • Rig 3. Slice / uncaging rig
          • Prototyping equipment
          • Rig 3 Laser Alignment (Class 4 UV Laser) Standard Operating Procedure (SOP)
        • Rig 4 Multichannel electrophysiology / visual stimulation
          • Construction
          • Using Plexon
        • Rig 5.
          • IMAQ camera issues
        • S10/BNC rigs
      • Shared Facilities
        • Admin
        • Hood
        • Microtome
        • Perfusion Sink
        • Fraden lab 2-photon FLIM system
        • Microtome
        • Marianas Spinning Disk
      • Stereotaxic frames (for medium animals)
    • Orders
      • Place Order
      • View past orders
      • Ferrets
      • Reimbursement
      • Common items
      • Exceptions to normal orders
      • FedEx
      • Expensive stuff
      • Management
        • P-cards
        • Companies
        • Logins, etc. for Companies and Computers
    • Procedures & recipes
      • SEE "ANIMALS" FOR IN VIVO PROCEDURES
      • AAV/Lentivirus
      • Cutting an optical fiber: How to achieve a good cut
      • Dark Rearing Schematics
      • Ferret brain blocking
      • Ferret perfusion solutions
      • Golgi-Cox Staining
      • How to mount an LED
      • Oregon Green BAPTA-1 AM Storage
      • PI joining experiment
      • Swadlow lab notes
      • Standard Operating Procedures (SOPs)
        • Ultraviolet light sterilization
    • Resources
      • A Repository of Useful Information
      • A list of actions for equality
      • Data Management Plan
      • Electrodes
        • Gardner lab style carbon fiber bundles
      • Electronics
      • Geography
      • Grants
        • Applications
        • Grant Info
        • grant policies
        • Notes
        • Undergrad Grants
        • University Undergraduate prizes
      • Lab Jobs
        • Lab Job Matrix
        • Drug Czar Responsibilities
        • Fume Hood Czar
        • Gas Tank Stocking & Ordering Responsibilities
        • Histology Czar Responsibilities
        • Perfusion Sink Czar
        • Safety Officer, Expiration Checker, Facilities Walkthrough Job Description
        • Old
          • Dan Notes
      • Lab meetings
        • What to do when you're the presenter
        • Business
        • Lab meeting history
        • Vision Journal Club
      • Lab Notebooks
        • Electronic notebooks
          • Steve V's notebooks
        • Instructions
      • Lab visits
        • Swadlow lab visit
      • Making Good Presentations
      • Office stuff
        • A New Person Checklist
        • Contact info
        • Editing the web page
        • Grants
        • Mailing lists
        • Management
        • Office FAQ
        • People
          • Academic Year Undergrads
          • Rotations
          • Summer undergrads
      • Optics/Imaging
        • 2-photon microscopy
          • 2-photon excitation wavelengths
        • Lab Optics Inventory
        • Optics/Imaging at Brandeis
        • ThorLabs
      • Posters
        • Making a poster
      • Reading
        • Adult plasticity
        • Amblyopia / Myopia
        • Auditory
        • Big data
        • Books
        • Books wish list
        • Calcium imaging
        • Cerebral Visual Impairment
        • Cortex
        • CSD
        • Development of orientation selectivity and ocular dominance
        • Direction selectivity -- experimental papers
        • Electrodes
        • Ferret cortex before eye opening
        • LGN -- lateral geniculate nucleus
        • Microscopy
        • Modeling
        • Modeling -- development of direction selectivity
        • Models of direction selectivity
        • New lab members
        • New undergrads
        • Optics
        • Premature experience
        • Reverse correlation
        • Reviews
        • Quotes
        • Searching for journal articles
        • Spatial frequency tuning
        • Stats
        • STDP
        • Supralinear Stabilized Networks
        • Surround modulation
        • Teaching
        • Thalamocortical
        • Thoughts
          • From the group leader
        • Virus
        • Vision Tech
        • Visual cortex
      • Rotation reports
        • Rotation Reports
        • 2010-2011 1
          • Heather Panic -- Slice scope 1
          • Tony Ng - High speed scanning 2-photon
        • 2010-2011 2
          • Krista Disano
          • Neil Ritter
        • 2011-2012
          • Aaron Bergman
          • Brittney Gardner
          • Nate Miska
          • Pranay Bharadwaj
          • Stephen Alkins
        • 2012-2013
          • Alice Gelman (fall semester)
          • Anna Chavez
          • Meredith Blankenship
          • Narendra Mukherjee
        • 2013-2014
          • Joe Wachutka
          • Mark Zielinski
          • Sarah Richards
          • Shen Wang
          • Wesley Alford
        • 2014-2015
          • Alejandro Torrado Pacheco
          • Chelsea Groves Khunle
          • Claire Symanski
          • David Hampton
          • Linnea Herzog
        • 2015-2016
          • Andrea Stacy
          • Derek Wise
          • Libby Lueck
          • Mihwa Kang
          • Roshan Nanu
          • Wenbo Tang
        • 2016-2017
          • Hillary Rodgers
        • Susannah Sleppian
      • Safety
        • 1. Animal Care
        • Chemical Safety
          • Urethane SOP
        • Compressed Gases
        • Laser Safety
        • MSDS/chemical inventory
        • Throwing things away
        • Viruses
      • Theses
      • Useful images
      • Website reorg ideas
      • Where is it? (Locator)
      • Writing
      • Out-of-date stuff
        • A COVID-19 link list
        • Projects
          • K-L with Fiser lab
            • Analysis
            • analyzing Intan KL data
            • direction selectivity in Marjena's experiments
            • importing spikes from Plexon/LabView
            • K-L w/ Fiser lab
            • Logs
            • Ralf's advice on computing KLs
          • Virus
            • Injection ideas
            • Received viruses, DNA
          • Calcium imaging
            • Using vhtools for calcium imaging of third party images
          • Carbon Fiber
            • Jig Provenance
            • Reading
          • Dark-rearing, Normalization, and Surround Suppression
            • manuscript notes
          • Histology
            • April 2011
            • April 2012
            • August 2011
            • December 2011
            • Diagram: Ferret Brain Anatomy, Slice Anatomy
            • February 2012
            • Inhibitory Interneuron + NeuN Immunohistochemistry
            • Inhibitory Interneuron Cocktail
            • January 2012
            • July 2011
            • June 2011
            • March 2012
            • March2011
            • May 2011
            • September 2011
            • Virus Injected
            • Virus Injected - DsRed2
          • ProjectorScope
          • Reverse Correlation
          • Rem2 mouse imaging
          • Mouse Spines
            • Measuring spine density
          • LGN to Ctx anatomy
          • LGN development
          • LeafLabs
          • Intracellular in vivo Sharp Recording
            • Experiment Prep
          • ChR2
            • ChR2 Histology
            • steve analysis log
        • Tasks
          • Array Tomography
            • directory format
          • Ferret LGN
          • In vivo labeling
          • Mike Long Peltier
          • Scambled stimuli project
            • Feed-forward model
          • Steve

September 2011

Brain September 22 2011

Brain September 20 2011

  • [slice 31]

  • [slice 32]

  • [slice 33]

  • [slice 34]

  • [slice 35]

  • [slice 36]

Brain September 15 2011

  • [slice 71]

  • [slice 72]

  • [slice 77]

  • [slice 78]

  • [slice 79]

  • [slice 80]

  • [slice 81]

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