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MANUALS
MeasurementComputing USB1208FS
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Rig 1. Imaging/Electrophys rig
Documents
Logs
2011-12-11
Optical power tests
Optical Stimulator 2.0
Projector Set-up for Intrinsic Imaging System
Rig1. Diagram
Rig 2. 2-photon rig
2-photon imaging: workflow
2-photon quick setup / shutdown list
2-photon standard operating procedure (SOP)
SOP to add
brainstorms
Devices
Filter cubes
Laser calibration procedure
Laser calibration table
Repair notes
Troubleshooting the 2p rig
Rig 3. Slice / uncaging rig
Prototyping equipment
Rig 3 Laser Alignment (Class 4 UV Laser) Standard Operating Procedure (SOP)
Rig 4 Multichannel electrophysiology / visual stimulation
Construction
Using Plexon
Rig 5.
IMAQ camera issues
S10/BNC rigs
Shared Facilities
Admin
Hood
Microtome
Perfusion Sink
Fraden lab 2-photon FLIM system
Microtome
Marianas Spinning Disk
Stereotaxic frames (for medium animals)
Orders
Place Order
View past orders
Ferrets
Reimbursement
Common items
Exceptions to normal orders
FedEx
Expensive stuff
Management
P-cards
Companies
Logins, etc. for Companies and Computers
Procedures & recipes
SEE "ANIMALS" FOR IN VIVO PROCEDURES
AAV/Lentivirus
Cutting an optical fiber: How to achieve a good cut
Dark Rearing Schematics
Ferret brain blocking
Ferret perfusion solutions
Golgi-Cox Staining
How to mount an LED
Oregon Green BAPTA-1 AM Storage
PI joining experiment
Swadlow lab notes
Standard Operating Procedures (SOPs)
Ultraviolet light sterilization
Resources
A Repository of Useful Information
A list of actions for equality
Data Management Plan
Electrodes
Gardner lab style carbon fiber bundles
Electronics
Geography
Grants
Applications
Grant Info
grant policies
Notes
Undergrad Grants
University Undergraduate prizes
Lab Jobs
Lab Job Matrix
Drug Czar Responsibilities
Fume Hood Czar
Gas Tank Stocking & Ordering Responsibilities
Histology Czar Responsibilities
Perfusion Sink Czar
Safety Officer, Expiration Checker, Facilities Walkthrough Job Description
Old
Dan Notes
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What to do when you're the presenter
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Office FAQ
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Academic Year Undergrads
Rotations
Summer undergrads
Optics/Imaging
2-photon microscopy
2-photon excitation wavelengths
Lab Optics Inventory
Optics/Imaging at Brandeis
ThorLabs
Posters
Making a poster
Reading
Adult plasticity
Amblyopia / Myopia
Auditory
Big data
Books
Books wish list
Calcium imaging
Cerebral Visual Impairment
Cortex
CSD
Development of orientation selectivity and ocular dominance
Direction selectivity -- experimental papers
Electrodes
Ferret cortex before eye opening
LGN -- lateral geniculate nucleus
Microscopy
Modeling
Modeling -- development of direction selectivity
Models of direction selectivity
New lab members
New undergrads
Optics
Premature experience
Reverse correlation
Reviews
Quotes
Searching for journal articles
Spatial frequency tuning
Stats
STDP
Supralinear Stabilized Networks
Surround modulation
Teaching
Thalamocortical
Thoughts
From the group leader
Virus
Vision Tech
Visual cortex
Rotation reports
Rotation Reports
2010-2011 1
Heather Panic -- Slice scope 1
Tony Ng - High speed scanning 2-photon
2010-2011 2
Krista Disano
Neil Ritter
2011-2012
Aaron Bergman
Brittney Gardner
Nate Miska
Pranay Bharadwaj
Stephen Alkins
2012-2013
Alice Gelman (fall semester)
Anna Chavez
Meredith Blankenship
Narendra Mukherjee
2013-2014
Joe Wachutka
Mark Zielinski
Sarah Richards
Shen Wang
Wesley Alford
2014-2015
Alejandro Torrado Pacheco
Chelsea Groves Khunle
Claire Symanski
David Hampton
Linnea Herzog
2015-2016
Andrea Stacy
Derek Wise
Libby Lueck
Mihwa Kang
Roshan Nanu
Wenbo Tang
2016-2017
Hillary Rodgers
Susannah Sleppian
Safety
1. Animal Care
Chemical Safety
Urethane SOP
Compressed Gases
Laser Safety
MSDS/chemical inventory
Throwing things away
Viruses
Theses
Useful images
Website reorg ideas
Where is it? (Locator)
Writing
Out-of-date stuff
A COVID-19 link list
Projects
K-L with Fiser lab
Analysis
analyzing Intan KL data
direction selectivity in Marjena's experiments
importing spikes from Plexon/LabView
K-L w/ Fiser lab
Logs
Ralf's advice on computing KLs
Virus
Injection ideas
Received viruses, DNA
Calcium imaging
Using vhtools for calcium imaging of third party images
Carbon Fiber
Jig Provenance
Reading
Dark-rearing, Normalization, and Surround Suppression
manuscript notes
Histology
April 2011
April 2012
August 2011
December 2011
Diagram: Ferret Brain Anatomy, Slice Anatomy
February 2012
Inhibitory Interneuron + NeuN Immunohistochemistry
Inhibitory Interneuron Cocktail
January 2012
July 2011
June 2011
March 2012
March2011
May 2011
September 2011
Virus Injected
Virus Injected - DsRed2
ProjectorScope
Reverse Correlation
Rem2 mouse imaging
Mouse Spines
Measuring spine density
LGN to Ctx anatomy
LGN development
LeafLabs
Intracellular in vivo Sharp Recording
Experiment Prep
ChR2
ChR2 Histology
steve analysis log
Tasks
Array Tomography
directory format
Ferret LGN
In vivo labeling
Mike Long Peltier
Scambled stimuli project
Feed-forward model
Steve
VH Lab internal site
Home
Policies
Animals: IACUC & IBC
About
Protocols
Log forms
Charts and tables
Inspections
Marshall Farms ferret care correspondence
Controlled Substance FAQ
New people: Training for animal work (IACUC and IBC)
Non-survival surgeries
Water Deprivation
Zoey's Virus notes
Expired
Forms
Protocols
Controlled substances procedures
Devices
Borrowed
BNC_microscopes
Capnograph
Computers
FAQ
Future Name Ideas
Hardware
Installing new
Mac for office use
PC for office use
Server notes
Software
Data analysis/modeling for projects
Transferring experimental data
Updating software on Foghorn or Leghorn
Contact lenses
Dental drills
Electrodes
EXFO Xcite 120Q light source
Inscopix nVista
Kopf 700C electrode puller
Leica Microtome
Mai Tai laser
MANUALS
MeasurementComputing USB1208FS
NEC NP510 Projector
Perfusion Sink
Pipettes
Rigs
Rig 1. Imaging/Electrophys rig
Documents
Logs
2011-12-11
Optical power tests
Optical Stimulator 2.0
Projector Set-up for Intrinsic Imaging System
Rig1. Diagram
Rig 2. 2-photon rig
2-photon imaging: workflow
2-photon quick setup / shutdown list
2-photon standard operating procedure (SOP)
SOP to add
brainstorms
Devices
Filter cubes
Laser calibration procedure
Laser calibration table
Repair notes
Troubleshooting the 2p rig
Rig 3. Slice / uncaging rig
Prototyping equipment
Rig 3 Laser Alignment (Class 4 UV Laser) Standard Operating Procedure (SOP)
Rig 4 Multichannel electrophysiology / visual stimulation
Construction
Using Plexon
Rig 5.
IMAQ camera issues
S10/BNC rigs
Shared Facilities
Admin
Hood
Microtome
Perfusion Sink
Fraden lab 2-photon FLIM system
Microtome
Marianas Spinning Disk
Stereotaxic frames (for medium animals)
Orders
Place Order
View past orders
Ferrets
Reimbursement
Common items
Exceptions to normal orders
FedEx
Expensive stuff
Management
P-cards
Companies
Logins, etc. for Companies and Computers
Procedures & recipes
SEE "ANIMALS" FOR IN VIVO PROCEDURES
AAV/Lentivirus
Cutting an optical fiber: How to achieve a good cut
Dark Rearing Schematics
Ferret brain blocking
Ferret perfusion solutions
Golgi-Cox Staining
How to mount an LED
Oregon Green BAPTA-1 AM Storage
PI joining experiment
Swadlow lab notes
Standard Operating Procedures (SOPs)
Ultraviolet light sterilization
Resources
A Repository of Useful Information
A list of actions for equality
Data Management Plan
Electrodes
Gardner lab style carbon fiber bundles
Electronics
Geography
Grants
Applications
Grant Info
grant policies
Notes
Undergrad Grants
University Undergraduate prizes
Lab Jobs
Lab Job Matrix
Drug Czar Responsibilities
Fume Hood Czar
Gas Tank Stocking & Ordering Responsibilities
Histology Czar Responsibilities
Perfusion Sink Czar
Safety Officer, Expiration Checker, Facilities Walkthrough Job Description
Old
Dan Notes
Lab meetings
What to do when you're the presenter
Business
Lab meeting history
Vision Journal Club
Lab Notebooks
Electronic notebooks
Steve V's notebooks
Instructions
Lab visits
Swadlow lab visit
Making Good Presentations
Office stuff
A New Person Checklist
Contact info
Editing the web page
Grants
Mailing lists
Management
Office FAQ
People
Academic Year Undergrads
Rotations
Summer undergrads
Optics/Imaging
2-photon microscopy
2-photon excitation wavelengths
Lab Optics Inventory
Optics/Imaging at Brandeis
ThorLabs
Posters
Making a poster
Reading
Adult plasticity
Amblyopia / Myopia
Auditory
Big data
Books
Books wish list
Calcium imaging
Cerebral Visual Impairment
Cortex
CSD
Development of orientation selectivity and ocular dominance
Direction selectivity -- experimental papers
Electrodes
Ferret cortex before eye opening
LGN -- lateral geniculate nucleus
Microscopy
Modeling
Modeling -- development of direction selectivity
Models of direction selectivity
New lab members
New undergrads
Optics
Premature experience
Reverse correlation
Reviews
Quotes
Searching for journal articles
Spatial frequency tuning
Stats
STDP
Supralinear Stabilized Networks
Surround modulation
Teaching
Thalamocortical
Thoughts
From the group leader
Virus
Vision Tech
Visual cortex
Rotation reports
Rotation Reports
2010-2011 1
Heather Panic -- Slice scope 1
Tony Ng - High speed scanning 2-photon
2010-2011 2
Krista Disano
Neil Ritter
2011-2012
Aaron Bergman
Brittney Gardner
Nate Miska
Pranay Bharadwaj
Stephen Alkins
2012-2013
Alice Gelman (fall semester)
Anna Chavez
Meredith Blankenship
Narendra Mukherjee
2013-2014
Joe Wachutka
Mark Zielinski
Sarah Richards
Shen Wang
Wesley Alford
2014-2015
Alejandro Torrado Pacheco
Chelsea Groves Khunle
Claire Symanski
David Hampton
Linnea Herzog
2015-2016
Andrea Stacy
Derek Wise
Libby Lueck
Mihwa Kang
Roshan Nanu
Wenbo Tang
2016-2017
Hillary Rodgers
Susannah Sleppian
Safety
1. Animal Care
Chemical Safety
Urethane SOP
Compressed Gases
Laser Safety
MSDS/chemical inventory
Throwing things away
Viruses
Theses
Useful images
Website reorg ideas
Where is it? (Locator)
Writing
Out-of-date stuff
A COVID-19 link list
Projects
K-L with Fiser lab
Analysis
analyzing Intan KL data
direction selectivity in Marjena's experiments
importing spikes from Plexon/LabView
K-L w/ Fiser lab
Logs
Ralf's advice on computing KLs
Virus
Injection ideas
Received viruses, DNA
Calcium imaging
Using vhtools for calcium imaging of third party images
Carbon Fiber
Jig Provenance
Reading
Dark-rearing, Normalization, and Surround Suppression
manuscript notes
Histology
April 2011
April 2012
August 2011
December 2011
Diagram: Ferret Brain Anatomy, Slice Anatomy
February 2012
Inhibitory Interneuron + NeuN Immunohistochemistry
Inhibitory Interneuron Cocktail
January 2012
July 2011
June 2011
March 2012
March2011
May 2011
September 2011
Virus Injected
Virus Injected - DsRed2
ProjectorScope
Reverse Correlation
Rem2 mouse imaging
Mouse Spines
Measuring spine density
LGN to Ctx anatomy
LGN development
LeafLabs
Intracellular in vivo Sharp Recording
Experiment Prep
ChR2
ChR2 Histology
steve analysis log
Tasks
Array Tomography
directory format
Ferret LGN
In vivo labeling
Mike Long Peltier
Scambled stimuli project
Feed-forward model
Steve
More
Home
Policies
Animals: IACUC & IBC
About
Protocols
Log forms
Charts and tables
Inspections
Marshall Farms ferret care correspondence
Controlled Substance FAQ
New people: Training for animal work (IACUC and IBC)
Non-survival surgeries
Water Deprivation
Zoey's Virus notes
Expired
Forms
Protocols
Controlled substances procedures
Devices
Borrowed
BNC_microscopes
Capnograph
Computers
FAQ
Future Name Ideas
Hardware
Installing new
Mac for office use
PC for office use
Server notes
Software
Data analysis/modeling for projects
Transferring experimental data
Updating software on Foghorn or Leghorn
Contact lenses
Dental drills
Electrodes
EXFO Xcite 120Q light source
Inscopix nVista
Kopf 700C electrode puller
Leica Microtome
Mai Tai laser
MANUALS
MeasurementComputing USB1208FS
NEC NP510 Projector
Perfusion Sink
Pipettes
Rigs
Rig 1. Imaging/Electrophys rig
Documents
Logs
2011-12-11
Optical power tests
Optical Stimulator 2.0
Projector Set-up for Intrinsic Imaging System
Rig1. Diagram
Rig 2. 2-photon rig
2-photon imaging: workflow
2-photon quick setup / shutdown list
2-photon standard operating procedure (SOP)
SOP to add
brainstorms
Devices
Filter cubes
Laser calibration procedure
Laser calibration table
Repair notes
Troubleshooting the 2p rig
Rig 3. Slice / uncaging rig
Prototyping equipment
Rig 3 Laser Alignment (Class 4 UV Laser) Standard Operating Procedure (SOP)
Rig 4 Multichannel electrophysiology / visual stimulation
Construction
Using Plexon
Rig 5.
IMAQ camera issues
S10/BNC rigs
Shared Facilities
Admin
Hood
Microtome
Perfusion Sink
Fraden lab 2-photon FLIM system
Microtome
Marianas Spinning Disk
Stereotaxic frames (for medium animals)
Orders
Place Order
View past orders
Ferrets
Reimbursement
Common items
Exceptions to normal orders
FedEx
Expensive stuff
Management
P-cards
Companies
Logins, etc. for Companies and Computers
Procedures & recipes
SEE "ANIMALS" FOR IN VIVO PROCEDURES
AAV/Lentivirus
Cutting an optical fiber: How to achieve a good cut
Dark Rearing Schematics
Ferret brain blocking
Ferret perfusion solutions
Golgi-Cox Staining
How to mount an LED
Oregon Green BAPTA-1 AM Storage
PI joining experiment
Swadlow lab notes
Standard Operating Procedures (SOPs)
Ultraviolet light sterilization
Resources
A Repository of Useful Information
A list of actions for equality
Data Management Plan
Electrodes
Gardner lab style carbon fiber bundles
Electronics
Geography
Grants
Applications
Grant Info
grant policies
Notes
Undergrad Grants
University Undergraduate prizes
Lab Jobs
Lab Job Matrix
Drug Czar Responsibilities
Fume Hood Czar
Gas Tank Stocking & Ordering Responsibilities
Histology Czar Responsibilities
Perfusion Sink Czar
Safety Officer, Expiration Checker, Facilities Walkthrough Job Description
Old
Dan Notes
Lab meetings
What to do when you're the presenter
Business
Lab meeting history
Vision Journal Club
Lab Notebooks
Electronic notebooks
Steve V's notebooks
Instructions
Lab visits
Swadlow lab visit
Making Good Presentations
Office stuff
A New Person Checklist
Contact info
Editing the web page
Grants
Mailing lists
Management
Office FAQ
People
Academic Year Undergrads
Rotations
Summer undergrads
Optics/Imaging
2-photon microscopy
2-photon excitation wavelengths
Lab Optics Inventory
Optics/Imaging at Brandeis
ThorLabs
Posters
Making a poster
Reading
Adult plasticity
Amblyopia / Myopia
Auditory
Big data
Books
Books wish list
Calcium imaging
Cerebral Visual Impairment
Cortex
CSD
Development of orientation selectivity and ocular dominance
Direction selectivity -- experimental papers
Electrodes
Ferret cortex before eye opening
LGN -- lateral geniculate nucleus
Microscopy
Modeling
Modeling -- development of direction selectivity
Models of direction selectivity
New lab members
New undergrads
Optics
Premature experience
Reverse correlation
Reviews
Quotes
Searching for journal articles
Spatial frequency tuning
Stats
STDP
Supralinear Stabilized Networks
Surround modulation
Teaching
Thalamocortical
Thoughts
From the group leader
Virus
Vision Tech
Visual cortex
Rotation reports
Rotation Reports
2010-2011 1
Heather Panic -- Slice scope 1
Tony Ng - High speed scanning 2-photon
2010-2011 2
Krista Disano
Neil Ritter
2011-2012
Aaron Bergman
Brittney Gardner
Nate Miska
Pranay Bharadwaj
Stephen Alkins
2012-2013
Alice Gelman (fall semester)
Anna Chavez
Meredith Blankenship
Narendra Mukherjee
2013-2014
Joe Wachutka
Mark Zielinski
Sarah Richards
Shen Wang
Wesley Alford
2014-2015
Alejandro Torrado Pacheco
Chelsea Groves Khunle
Claire Symanski
David Hampton
Linnea Herzog
2015-2016
Andrea Stacy
Derek Wise
Libby Lueck
Mihwa Kang
Roshan Nanu
Wenbo Tang
2016-2017
Hillary Rodgers
Susannah Sleppian
Safety
1. Animal Care
Chemical Safety
Urethane SOP
Compressed Gases
Laser Safety
MSDS/chemical inventory
Throwing things away
Viruses
Theses
Useful images
Website reorg ideas
Where is it? (Locator)
Writing
Out-of-date stuff
A COVID-19 link list
Projects
K-L with Fiser lab
Analysis
analyzing Intan KL data
direction selectivity in Marjena's experiments
importing spikes from Plexon/LabView
K-L w/ Fiser lab
Logs
Ralf's advice on computing KLs
Virus
Injection ideas
Received viruses, DNA
Calcium imaging
Using vhtools for calcium imaging of third party images
Carbon Fiber
Jig Provenance
Reading
Dark-rearing, Normalization, and Surround Suppression
manuscript notes
Histology
April 2011
April 2012
August 2011
December 2011
Diagram: Ferret Brain Anatomy, Slice Anatomy
February 2012
Inhibitory Interneuron + NeuN Immunohistochemistry
Inhibitory Interneuron Cocktail
January 2012
July 2011
June 2011
March 2012
March2011
May 2011
September 2011
Virus Injected
Virus Injected - DsRed2
ProjectorScope
Reverse Correlation
Rem2 mouse imaging
Mouse Spines
Measuring spine density
LGN to Ctx anatomy
LGN development
LeafLabs
Intracellular in vivo Sharp Recording
Experiment Prep
ChR2
ChR2 Histology
steve analysis log
Tasks
Array Tomography
directory format
Ferret LGN
In vivo labeling
Mike Long Peltier
Scambled stimuli project
Feed-forward model
Steve
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